Rna Python Packages

seqfold

nucleic acid folding

graphein

Protein Graph Library

helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

eltetrado

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

pyaragorn

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

rnaglib

Toolkit for structure-based deep learning on RNA.

ncrnabert

ncRNABert: Deciphering the landscape of non-coding RNA using language model

metagene

Metagene Profiling Analysis and Visualization

pipeclip

Optimized version of PIPE-CLIP tool (bug fixed)

chilife

Python package for site-directed spin labeling of proteins

squarna

RNA secondary structure prediction tool

pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

seqme

Metrics for evaluating biological sequence design

deeprm

Deep learning for RNA Modification

barnaba

Analyse Nucleic Acids Structure and Simulations with baRNAba

pytximport

pytximport is Python implementation of `tximport` to transform transcript counts from transcriptome mapping tools into gene count estimations.

dashingturtle

An applicaton for building structural landscapes of RNA sequence modifications with Nanopore data.

hunana

HUNANA

ga4gh

A reference implementation of the GA4GH API

unitvelo

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

rnpfind

Bioinformatics tool for exploring RNA-Protein interactions

xpore

xpore is a python package for Nanopore data analysis of differential RNA modifications.