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Phylogenetic Trees Python Packages

Python packages with the GitHub topic phylogenetic-trees. Sorted by relevance, with stars and monthly downloads.
cogent3
cogent3

Comparative Genomics Toolkit 3

23K 135 67
moshi4
pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

21K 1K 61
albertyw
itolapi

Python API for the Interactive Tree of Life (iTOL)

3K 38 11
biobakery
phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

3K 166 36
ponnhide
python-circos

python Circos

2K 372 66
LegumeFederation
lorax

a web server that "speaks for the (phylogenetic) trees"

1K 1 2
david-schaller
asymmetree

Simulation of phylogenetic trees, sequences and genomes

1K 7 2
DeadlineWasYesterday
bionick

Tools for newick file manipulation and visualization.

958 0 0
davised
automlsa2

Automated Multi-Locus Sequence Analysis tool

926 5 0
lkndl
ab12phylo

Integrated pipeline for ML phylogenetic inference from ABI trace and FASTA data

862 3 3
rmcar17
sc-supertree

A supertree method for rooted source trees

735 12 1
AndreaRubbi
pear-ebi

Calculates distances of trees in large collections. Embeds distances and plot the embeddings with dynamic interfaces.

538 6 3
moshi4
cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

415 36 3
shanedrabing
taxopedia

Taxonomic trees (cladograms) from Wikipedia-scraped data.

291 10 1
moshi4
phytreeviz

Simple phylogenetic tree visualization python package for phylogenetic analysis

281 66 1
mycolab
mycolab

Suite of mycology applications and tools for automating common lab workflows.

246 5 0
biobakery
graphlan

High-quality circular representations of taxonomic and phylogenetic trees

144 109 30
iliapopov17
phyloki

🌳Tool to fetch seqs metadata from NCBI to annotate phylogenetic trees

106 0 0
Robaina
jplaceparser

A python parser for jplace (evolutionary placement) files

46 3 0
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