Parameter Estimation Python Packages

casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python, Matlab/Octave, Julia or Javascript

pints

Probabilistic Inference on Noisy Time Series

sbi

sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.

petab

Python package for working with PEtab files

amici

High-performance sensitivity analysis for large ordinary differential equation models

pypesto

python Parameter EStimation TOolbox

chekipeuq

Parameter estimation for complex physical problems often suffers from finding ‘solutions’ that are not physically realistic. The PEUQSE software provides tools for finding physically realistic parameter estimates, graphs of the parameter estimate positions within parameter space, and plots of the final simulation results.

biomass

A Python Framework for Modeling and Analysis of Signaling Systems

casadi-gil-comp

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python, Matlab/Octave, Julia or Javascript

pycotools

A Python Toolbox for COPASI

parametrix

🪄 Flax-like computed parameters for bare JAX (and Equinox)

apexmf

python modules for APEX-MODFLOW-RT3D-Salt (AMRS) model parameter estimation and uncertainty analysis

symbolic-regression-toolkit

Toolkit for symbolic regression/equation discovery

pycotools3

A Python toolbox for COPASI

psweep

Loop like a pro, make parameter studies fun.

peuqse

Parameter estimation for complex physical problems often suffers from finding ‘solutions’ that are not physically realistic. The PEUQSE software provides tools for finding physically realistic parameter estimates, graphs of the parameter estimate positions within parameter space, and plots of the final simulation results.

welltestpy

A python-package for handling well based field campaigns.

petab-gui

A graphical PEtab editor

swyft

A system for scientific simulation-based inference at scale.

petabtests

PEtab test suite

chi-drm

Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).

lim-sample

Implementation of SAMPLE (Spectral Analysis for Modal Parameter Linear Estimate)

sinistra

Drift-diffusion model (DDM) simulator with EZ-diffusion and simulation-based parameter recovery — Rust core, Python bindings

madys

MADYS: isochronal parameter determination for young stellar and substellar objects