Parameter Estimation Python Packages

casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

sbi

sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.

pints

Probabilistic Inference on Noisy Time Series

petab

Python package for working with PEtab files

amici

High-performance sensitivity analysis for large ordinary differential equation models

chekipeuq

This is the CheKiPEUQ package which stands for Chemical Kinetics Parameter Estimation and Uncertainty Quantification. See https://github.com/AdityaSavara/CheKiPEUQ for more information.

casadi-gil-comp

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

psweep

Loop like a pro, make parameter studies fun.

pypesto

python Parameter EStimation TOolbox

biomass

A Python Framework for Modeling and Analysis of Signaling Systems

pvfit5

Estimation of the five parameters of the PV single-diode model from datasheet data at STC

apexmf

apexmf is a set of python modules for APEX-MODFLOW model evaluation and parameter estimation.

pycotools

A Python Toolbox for COPASI

petab-gui

Graphical user interface for the PEtab format

swyft

A system for scientific simulation-based inference at scale.

pycotools3

A Python toolbox for COPASI

symbolic-regression-toolkit

Toolkit for symbolic regression/equation discovery

lim-sample

Implementation of SAMPLE (Spectral Analysis for Modal Parameter Linear Estimate)

peuqse

This is the PEUQSE package which stands for Parameter Estimation and Uncertainty Quantification for Science and Engineering. See https://github.com/AdityaSavara/PEUQSE for more information.

chi-drm

A python package to model dose response dynamics.

madys

MADYS: isochronal parameter determination for young stellar and substellar objects

welltestpy

A python-package for handling well based field campaigns.

estim8

Parameter estimation of bioprocess models

tsblender

Drop-in replacement for TSPROC that is a utility for inverse modeling with PEST.