PyRank

Molecular Evolution Python Packages

Python packages with the GitHub topic molecular-evolution. Sorted by relevance, with stars and monthly downloads.
cogent3
cogent3

Comparative Genomics Toolkit 3

10K 136 67
lukasturcani
stk

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

10K 286 52
jbloomlab
phydms

phylogenetic analyses informed by deep mutational scanning data

435 15 6
wesleybeckner
gains

Genetic Algorithm for Identifying Novel Structures (GAINS)

350 6 2
moshi4
fastdtlmapper

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

348 17 5
moshi4
cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

329 37 3
jmenglund
predsim

Simulate predictive datasets from MrBayes' output

307 2 0
moshi4
mgcplotter

Microbial Genome Circular plotting tool using Circos

180 39 8