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Molecular Evolution Python Packages

Python packages with the GitHub topic molecular-evolution. Sorted by relevance, with stars and monthly downloads.
cogent3
cogent3

Comparative Genomics Toolkit 3

23K 135 67
lukasturcani
stk

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

6K 284 52
moshi4
cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

415 36 3
jbloomlab
phydms

Phylogenetic analyses informed by deep mutational scanning data.

331 15 6
moshi4
fastdtlmapper

Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool

327 17 5
wesleybeckner
gains

project that enables molecular design and computational screening of small molecules

319 6 2
jmenglund
predsim

Command-line tool for simulating predictive datasets from MrBayes' output.

286 2 0
moshi4
mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

191 38 8
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