Molecular Evolution Python Packages

cogent3

Comparative Genomics Toolkit 3

stk

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

phydms

Phylogenetic analyses informed by deep mutational scanning data.

fastdtlmapper

Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool

gains

project that enables molecular design and computational screening of small molecules

predsim

Command-line tool for simulating predictive datasets from MrBayes' output.

mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos