Markov Chain Python Packages

palantir

Single cell trajectory detection

pypmc

Clustering with variational Bayes and population Monte Carlo

neuralmind

Persistent memory for AI coding agents. Your agent learns your codebase the way a senior engineer would — what files go together, what you usually edit next. Works with Claude Code, Cursor, Cline, Continue. 100% local. (Side effect: 12-50× cheaper code questions.)

cogent3

Comparative Genomics Toolkit 3

lzgraphs

Alignment-free graph models of TCR and BCR repertoires built from Lempel-Ziv and FlashBack string decompositions. Compute sequence generation probability (Pgen) and repertoire diversity, and generate new sequences. Python with a C core.

pydtmc

A library for discrete-time Markov chains analysis.

curvesimulator

CurveSimulator is a reliable n-Body Python package for fast and flexible Orbital Parameter Determination (MCMC). It can also generate highly configurable videos for teaching, public outreach, and scientific insight.

neworder

A dynamic microsimulation framework for python

paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

markov-kmeans

Early stopping for K-means: stop when only boundary points still switch clusters, and settle them from their own label history. Shorter runs, uncertainty flags, soft memberships. Exact Lloyd, mini-batch and EMA (constant-step) training. scikit-learn compatible.

pyerrors

Error propagation and statistical analysis for Monte Carlo simulations in lattice QCD and statistical mechanics using autograd.

phasedist

Fit phase-type distributions in Python

markov-draftjs

Draft.js sample content generated with Markov chains of Project Gutenberg books.

markify

Markify is an open source command line application written in python which scrapes data from your social media accounts and utilises markov chains to generate new sentences based on the scraped data

baypy

Python library for solving bayesian regression models through a Monte Carlo Markov chain sampling.

chainopy

A Python Library for Discrete Time Markov Chain based stochastic analysis

mchmm

Markov Chains and Hidden Markov Models in Python

markovchain

Markov chain generator

midigen

Python library for generating simple chord progression midi files

markov-word-generator

A small Python library to generate random credible words based on a list of words by estimating the probability of the next character from the frequency of the previous ones

optiflowx

A lightweight Python library for turning stochastic-process mathematics, time-series methods, and state-space models into executable, validated, and testable objects

cov19

Modelling epidemic curve with SIRD model.

ia-markov

Train Markov models on Internet Archive text files.

pykda

Python package for the Kemeny Decomposition Algorithm (KDA) together with some Markov chain tooling.