Image Analysis Python Packages

simpleitk

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

squidpy

Spatial Single Cell Analysis in Python

cucim

cuCIM - RAPIDS GPU-accelerated image processing library

fpzip

Cython bindings for fpzip, a floating point image compression algorithm.

cucim-cu12

cuCIM - RAPIDS GPU-accelerated image processing library

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

scimap

Spatial Single-Cell Analysis Toolkit

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

abraia

Abraia computer vision SDK for edge applications

pyclesperanto

GPU-accelerated Image Processing library for Python

porespy

A set of tools for characterizing and analyzing 3D images of porous materials

pycytominer

Python package for image-based profiling

phasorpy

An open-source Python library for the analysis of luminescence lifetime and hyperspectral images using the phasor approach.

cucim-cu13

cuCIM - RAPIDS GPU-accelerated image processing library

cellfinder

Automated 3D cell detection in very large images

plantcv

Plant phenotyping with image analysis

diplib

Quantitative Image Analysis in C++, MATLAB and Python