PyRank

Htslib Python Packages

Python packages with the GitHub topic htslib. Sorted by monthly downloads, with stars and forks.
pysam-developers
pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

1.3M 912 303
brentp
cyvcf2

cython + htslib == fast VCF and BCF processing

147K 450 80
chrisaperez
scrna-matrix

High-performance C++ genomics library and Python extension for fast omics processing, sequence analysis, and stream profiling.

4K 1 0
dnncha
turbo-picard

Picard-compatible Rust tools for faster SAM/BAM/CRAM, VCF, duplicate-marking and sequencing-QC workflows.

3K 4 0
chrisaperez
pto-core

High-performance C++ genomics library and Python extension for fast omics processing, sequence analysis, and stream profiling.

1K 1 0
innovate-invent
bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression

40 1 0
pysam-developers
pysam-cabbage

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

37 912 303
pysam-developers
pysam-arm-linux

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

0 912 303