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Htslib Python Packages

Python packages with the GitHub topic htslib. Sorted by relevance, with stars and monthly downloads.
pysam-developers
pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

1.2M 890 298
brentp
cyvcf2

cython + htslib == fast VCF and BCF processing

212K 440 77
pysam-developers
pysam-cabbage

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

64 890 298
innovate-invent
bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression

59 1 0
pysam-developers
pysam-arm-linux

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

39 890 298
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