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Evolution Python Packages

Python packages with the GitHub topic evolution. Sorted by relevance, with stars and monthly downloads.
google
pyglove

Manipulating Python Programs

541K 711 34
cogent3
cogent3

Comparative Genomics Toolkit 3

23K 135 67
jlsteenwyk
clipkit

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

11K 89 5
jlsteenwyk
phykit

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

9K 85 9
emilydolson
phylotrackpy

Python phylogeny tracker for in silico evolution experiments

8K 11 2
lucidrains
x-transformers-rl

Implementation of a transformer for reinforcement learning using `x-transformers`

4K 73 6
lucidrains
evolutionary-policy-optimization

Pytorch implementation of Evolutionary Policy Optimization, from Wang et al. of the Robotics Institute at Carnegie Mellon University

4K 109 4
mRcSchwering
magicsoup

MagicSoup is a game that simulates cell metabolic and transduction pathway evolution. Define a 2D world with certain molecules and reactions. Add a few cells and create evolutionary pressure by selectively replicating and killing them. Then run and see what random mutations can do.

3K 2 0
pioreactor
pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

3K 140 17
lucidrains
x-evolution

Implementation of various evolutionary algorithms, starting with evolutionary strategies

3K 50 7
faridrashidi
trisicell

No description available

2K 14 2
PasaOpasen
oppoppopinit

PyPI package containing opposition learning operators and population initializers for evolutionary algorithms

2K 6 2
charlesrocabert
metevolsim

MetEvolSim (Metabolome Evolution Simulator) Python Package

2K 5 0
Christopher-K-Long
py-ste

A Python package for evolving unitaries and states under the Schrödinger equation using first-order Suzuki-Trotter and computing switching functions.

2K 5 1
jlsteenwyk
jlsteenwyk-biokit

a versatile toolkit for processing and analyzing diverse types of sequence data

1K 22 10
DessimozLab
fastoma

FastOMA is a scalable software package to infer orthology relationship.

1K 98 17
Atlantic83
neocoder

neoCoder - AI-Native Engineering Agent for Enterprise-Scale Codebase

1K 4 0
david-schaller
asymmetree

Simulation of phylogenetic trees, sequences and genomes

1K 7 2
tusharhero
darwinio

Evolution Simulator

874 20 8
faridrashidi
scphylo-tools

A python toolkit for single-cell tumor phylogenetic analysis

793 7 1
InnovativeAI-adaad
adaad

ADAAD — Autonomous Development & Adaptation Architecture: governance-first constitutional AI evolution runtime

669 9 1
phenopype
phenopype

A phenotyping pipeline for python

606 13 4
pablocarderam
opqua

An epidemiological modeling framework for population genetics and evolution.

562 18 7
harmslab
gpmap

A Python API for managing genotype-phenotype map data

520 12 8
    • Data from PyPI, GitHub, ClickHouse, and BigQuery