Biopython Python Packages

biopython

Official git repository for Biopython (originally converted from CVS)

splicecraft

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

iplotx

Visualise networks and trees in Python, with style.

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

cogent3

Comparative Genomics Toolkit 3

python-circos

python Circos

seqlike

Unified biological sequence manipulation in Python

pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

bioprov

A provenance library for bioinformatics workflows 🧬 🔀 📝

biobridge

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

phylopandas

Pandas DataFrames for phylogenetics

moclo

Modular cloning simulation with the MoClo framework in Python

pandas-charm

Python library for getting character matrices (alignments) into and out of pandas

gbkviz

Simple web application to visualize and compare genomes in Genbank files

phytreeviz

Simple phylogenetic tree visualization python package

orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

vcfsynonymous

Detect synonymous genetic variants in VCF

mikoshi-bio

Molecular modeling extension for MikoshiLang — protein structures, MD analysis, and docking

moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

perf-ssr

PERF is an exhaustive repeat finder

moclo-ytk

Modular cloning simulation with the MoClo framework in Python

moclo-cidar

Modular cloning simulation with the MoClo framework in Python

enigmadatabase

NCBI DNA Database Builder and Dataset Loader for ML pipelines (Enigma2).