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Biopython Python Packages

Python packages with the GitHub topic biopython. Sorted by relevance, with stars and monthly downloads.
biopython
biopython

Official git repository for Biopython (originally converted from CVS)

8.9M 5K 2K
fabilab
iplotx

Visualise networks and trees in Python, with style.

41K 89 3
cogent3
cogent3

Comparative Genomics Toolkit 3

23K 135 67
pydna-group
pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

20K 225 48
Edinburgh-Genome-Foundry
snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

18K 31 8
modernatx
seqlike

Unified biological sequence manipulation in Python

3K 208 21
ponnhide
python-circos

python Circos

2K 372 66
vinisalazar
bioprov

BioProv - Provenance capture for bioinformatics workflows

1K 14 1
Okerew
biobridge

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

614 7 0
althonos
moclo

A Python implementation of the MoClo system logic.

464 12 2
rkmlab
perf-ssr

PERF is an exhaustive repeat finder

400 33 11
Grelot
vcfsynonymous

read VCF and select synonymous or non-synonymous coding variants

331 1 0
moshi4
gbkviz

Simple web application to visualize and compare genomes in Genbank files

313 22 5
moshi4
phytreeviz

Simple phylogenetic tree visualization python package for phylogenetic analysis

288 66 1
Zsailer
phylopandas

Pandas for phylogenetics

286 75 22
althonos
orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. (renamed to pyorthoani)

286 36 4
jmenglund
pandas-charm

A small Python library for getting character matrices (alignments) into and out of pandas

248 0 0
althonos
moclo-ytk

Modular cloning simulation with the MoClo framework in Python

221 12 2
althonos
moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

189 12 2
delveopers
enigmadatabase

NCBI DNA Database Builder and Dataset Loader for ML pipelines (Enigma2).

186 0 0
althonos
moclo-cidar

Modular cloning simulation with the MoClo framework in Python

182 12 2
ChenHsieh
biololpython

Analyze bio sequences with internet slang

175 0 0
rodogi
biographs

Python class to easily deal with protein networks.

168 21 3
althonos
pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

167 36 4
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