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Dependencies
- bm3d >=4.0.3
- click >=8.3.0
- colour-science >=0.4.6
- dash >=4.1.0
- dash-bootstrap-components >=2.0.4
- dash-cytoscape >=1.0.2
- exifread >=3.5.1
- findiff >=0.12.2
- h5py
- imagecodecs >=2025.3.30
- kaleido >=1.2.0
- mahotas
- mmh3
- numba >=0.62.1
- numpy
- opencv-python
- pandas
- pillow
- plotly >=6.0.0
- polars >=1.41.2
- pooch >=1.8
- psutil >=7.0.0
- pyarrow >=23.0.1
- pydantic >=2.12.5
- pympler >=1.0.1
- python-lucide >=0.2.24
- rawpy
- rich >=14.2.0
- ruptures >=1.1.9
- scikit-image
- scikit-learn
- scipy
- seaborn
- threadpoolctl >=3.6.0
- tqdm
- tqdm-joblib >=0.0.5
- typing-extensions >=4.0.0
- wand >=0.6.13
16 optional dependencies
- huggingface-hub[foundation]
- ipykernel[gui]
- ipywidgets[gui]
- jinja2[gui]
- jupyter[gui]
- napari[napari]
- optuna[tune]
- phenotypic[gpu]
- phenotypic[foundation]
- psycopg[tune]
- pyvips[gui]
- sam2[torch]
- sqlalchemy[tune]
- torch[torch]
- torchvision[torch]
- transformers[foundation]