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Dependencies
- configargparse >=1.7.1
- einops >=0.8.1
- einops-exts >=0.0.4
- environs
- gdown >=4.6.0
- geopandas
- h5py
- hydra-core
- matplotlib
- ml-dtypes >=0.2
- numcodecs <0.16
- numpy
- opencv-python-headless
- pandas
- pyarrow >=23.0.1
- sacremoses
- scikit-learn
- setuptools
- shapely >=2.0.7
- tiffslide
- tqdm
- transformers <4.46
51 optional dependencies
- adlfs[distributed]
- aicsimageio[convert]
- azure-batch[distributed]
- azure-identity[distributed]
- azure-storage-blob[distributed]
- azure-storage-file-share[distributed]
- boto3[distributed]
- cucim[cucim]
- fairscale[fastattn]
- flash-attn[fastattn]
- fsspec[distributed]
- fvcore[fastattn]
- huggingface-hub[tensorflow-gpu]
- iopath[fastattn]
- keras[tensorflow-gpu]
- keras[tensorflow-cpu]
- lifelines[fastattn]
- ninja[fastattn]
- ome-zarr[zarr]
- omegaconf[fastattn]
- open-clip-torch[torch-gpu]
- open-clip-torch[fastattn]
- open-clip-torch[tensorflow-cpu]
- open-clip-torch[tensorflow-gpu]
- open-clip-torch[torch-cpu]
- pyvips[convert]
- s3fs[distributed]
- scikit-survival[fastattn]
- segmentation-models-pytorch[torch-gpu]
- segmentation-models-pytorch[torch-cpu]
- tensorflow[tensorflow-cpu]
- tensorflow[tensorflow-gpu]
- tf-keras[tensorflow-gpu]
- tf-keras[tensorflow-cpu]
- timm[fastattn]
- torch[tensorflow-gpu]
- torch[torch-cpu]
- torch[torch-gpu]
- torch[tensorflow-cpu]
- torch[fastattn]
- torchmetrics[fastattn]
- torchvision[tensorflow-gpu]
- torchvision[torch-cpu]
- torchvision[torch-gpu]
- torchvision[tensorflow-cpu]
- torchvision[fastattn]
- umap-learn[umap]
- wandb[fastattn]
- webdataset[fastattn]
- xformers[fastattn]
- zarr[zarr]