Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata
- bionty ==1.3.2
- biopython >=1.84
- biotite >=1.0.1
- bitsandbytes
- datasets >=2.14.6
- dm-tree >=0.1.8
- docstring-inheritance <=2.2.1
- einops >=0.8.0
- enformer-pytorch
- jsonargparse >=4.37.0
- lightning >=2.4.0
- lmdb
- local-attention
- ml-collections >=1.0.0
- numpy <2
- omegaconf >=2.3.0
- packaging
- pandas
- peft <=0.13.2
- pyfaidx
- scikit-learn
- scipy
- tiledb ==0.33.6
- tiledbsoma ==1.16.1
- tiledbsoma-ml ==0.1.0
- torch
- torchmetrics >=1.5.0
- transformers ==4.38.0
- wandb
8 optional dependencies
-
flash-attn==2.7.4.post1[flash-attn]extra == "flash-attn"
-
griffe-inherited-docstrings==1.1.1[dev]extra == "dev"
-
mkdocs-material==9.5.44[dev]extra == "dev"
-
mkdocstrings-python==1.12.2[dev]extra == "dev"
-
pre-commit[dev]extra == "dev"
-
pytest[dev]extra == "dev"
-
pytest-cov[dev]extra == "dev"
-
torch==2.6.0[flash-attn]extra == "flash-attn"