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Dependencies
- bokeh >=1.4.0
- cvxpy >=1.1.11
- dask >=2025.1.0
- datashader >=0.12.1
- distributed >=2025.1.0
- ecos >=2.0.7
- ffmpeg-python >=0.2.0
- holoviews >=1.12.7
- jinja2 >=2.11.3
- jupyter
- matplotlib
- medpy >=0.4.0
- natsort
- netcdf4
- networkx >=2.4
- numpy >=1.20.2
- opencv-python-headless >=4.2.0.34
- pandas >=1.2.3
- panel >=0.8.0
- pooch >=1.6.0
- pyfftw >=0.12.0
- rechunker >=0.3.3
- scikit-image >=0.18.1
- scikit-learn >=0.22.1
- scipy >=1.4.1
- scs
- simpleitk >=2.0.2
- sk-video
- sparse >=0.11.2
- statsmodels >=0.11.1
- tifffile
- typing-extensions >=4.0
- xarray >=0.17.0
- zarr
22 optional dependencies
- beautifulsoup4[doc]
- ipywidgets[test]
- ipywidgets[training]
- jupyter-bokeh[test]
- jupyter-bokeh[training]
- mediapy[training]
- mediapy[test]
- minian[test]
- minian[training]
- minisim[test]
- minisim[training]
- myst-parser[doc]
- nbsphinx[doc]
- numba[numba]
- psutil[test]
- pydata-sphinx-theme[doc]
- pytest[test]
- pytest-cov[test]
- rtds-action[doc]
- ruff[test]
- sphinx[doc]
- sphinx-argparse[doc]