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Dependencies
- argcomplete >=1.9.4
- argh >=0.26.2
- pyfaidx >=0.5.5.2
- simplejson
8 optional dependencies
- biopython[optional]
- make[docs]
- numpydoc[docs]
- pybedtools[optional]
- pytest[test]
- sphinx[docs]
- sphinx-autoapi[docs]
- sphinx-rtd-theme[docs]
Used By
- ncbi-datasets-pylib
- pygenometracks
- isoquant
- jcvi
- clinker
- torchcell
- omniclip
- cblaster
- chado-tools
- mpwt
- peaks2utr
- proksee-batch
- asodesigner
- openspliceai
- corekaburra
- gffutilsai
- splam
- deviate
- ngs-smap
- pypgatk
- lifton
- refinegems
- forensight
- midas2
- emapper2gbk
- crispr-cats
- rck
- bioh2m
- pansg
- genomeutils
- oligopoolio
- exonize
- scape-apa
- bio-wrangler
- pynextgen
- deduce-uces
- gene4mvcf
- denovowest
- midasv3
- pipemake-utils
- pyeasyfuse
- scikit-ribo
- transcriptionary
- tonina