Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- biopython
- genomespy
- gprofiler-official
- gradio
- hydra-core
- jupyter-packaging
- lingam
- matplotlib
- moods-python
- networkx
- nglview <4
- numpy
- omegaconf
- openpyxl
- pandas
- plotly
- pooch
- py3dmol
- pyarrow
- pybigwig
- pyfaidx
- pyranges
- requests
- s3fs
- scipy
- seaborn
- seqlogo
- tqdm
- xmlschema
- zarr <3
37 optional dependencies
-
culingam[gpu]extra == "gpu"
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ipykernel[dev]extra == "dev"
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ipython>=7.20[doc]extra == "doc"
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jupyter[dev]extra == "dev"
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jupyter-packaging[doc]extra == "doc"
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jupyter-packaging[dev]extra == "dev"
-
matplotlib!=3.6.1[doc]extra == "doc"
-
myst-nb>=1.1.2[doc]extra == "doc"
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myst-parser>=2[doc]extra == "doc"
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nbformat[dev]extra == "dev"
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nbsphinx[dev]extra == "dev"
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nbsphinx>=0.9[doc]extra == "doc"
-
nglview[dev]extra == "dev"
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pre-commit[dev]extra == "dev"
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profimp[test]extra == "test"
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py3dmol[dev]extra == "dev"
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pytest>=8.2[test]extra == "test"
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pytest-cov[test]extra == "test"
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pytest-mock[test]extra == "test"
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pytest-nunit[test]extra == "test"
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readthedocs-sphinx-search[doc]extra == "doc"
-
scanpy[dev]extra == "dev"
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scanpydoc>=0.14.1[doc]extra == "doc"
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scikit-misc[dev]extra == "dev"
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setuptools[doc]extra == "doc"
-
setuptools-scm[dev]extra == "dev"
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snapatac2[dev]extra == "dev"
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sphinx>=7[doc]extra == "doc"
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sphinx-autodoc-typehints>=1.25.2[doc]extra == "doc"
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sphinx-book-theme>=1.1.0[doc]extra == "doc"
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sphinx-copybutton[doc]extra == "doc"
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sphinx-design[doc]extra == "doc"
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sphinx-tabs[doc]extra == "doc"
-
sphinxcontrib-bibtex[doc]extra == "doc"
-
sphinxext-opengraph[doc]extra == "doc"
-
towncrier[doc]extra == "doc"
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towncrier[dev]extra == "dev"