Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- appdirs <2.0.0,>=1.4.4
- atomicwrites <2.0.0,>=1.4.0
- biopython <2.0,>=1.79
- celery <6.0.0,>=5.2.7
- flask-cors <4.0.0,>=3.0.10
- gensim <5.0.0,>=4.2.0
- gunicorn <21.0.0,>=20.1.0
- h5py <4.0.0,>=3.7.0
- humanize <5.0.0,>=4.1.0
- importlib-metadata <5.0.0,>=4.11.4
- lock <2019.0.0,>=2018.3.25
- matplotlib <4.0.0,>=3.5.2
- numpy <2.0.0,>=1.19.2
- pandas <2.0.0,>=1.4.2
- plotly <6.0.0,>=5.8.0
- python-slugify <7.0.0,>=6.1.2
- pyyaml ==6.0
- ruamel-yaml <0.18.0,>=0.17.10
- scikit-learn <2.0.0,>=1.1.1
- scipy <2.0.0,>=1.8.1
- sentencepiece ==0.1.96
- torch <=1.10.0,>=1.8.0
- tqdm <5.0.0,>=4.64.0
- umap-learn <0.6.0,>=0.5.3
-
vespa-effect
<2.0.0,>=1.0.0
python_version >= "3.8" and python_version < "4.0"
- werkzeug ==2.0.3
14 optional dependencies
-
bio-embeddings-allennlp==0.9.2[seqvec]extra == "seqvec" or extra == "all"
-
bio-embeddings-bepler==0.0.1[bepler]extra == "bepler" or extra == "all"
-
bio-embeddings-cpcprot==0.0.1[cpcprot]extra == "cpcprot" or extra == "all"
-
bio-embeddings-deepblast==0.1.0[deepblast]extra == "deepblast" or extra == "all"
-
bio-embeddings-plus==0.1.1[plus]extra == "plus" or extra == "all"
-
bio-embeddings-tape-proteins==0.5[cpcprot]extra == "cpcprot" or extra == "all"
-
fair-esm==2.0.0[esm]extra == "esm" or extra == "all"
-
flask<3.0.0,>=2.1.2[webserver]extra == "webserver"
-
fsspec==0.8.5[deepblast]extra == "deepblast"
-
jax-unirep<3.0.0,>=2.1.0[unirep]extra == "unirep" or extra == "all"
-
jaxlib<0.4.0,>=0.3.10[unirep]extra == "unirep"
-
pymongo<5.0.0,>=4.1.1[webserver]extra == "webserver"
-
sentry-sdk<2.0.0,>=1.5.12[webserver]extra == "webserver"
-
transformers<5.0.0,>=4.19.2[prottrans]extra == "prottrans" or extra == "transformers" or extra == "all"
Used By
- contra-il6 129/mo