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Wsi Python Packages

Python packages with the GitHub topic wsi. Sorted by relevance, with stars and monthly downloads.
histolab
histolab

Library for Digital Pathology Image Processing

13K 457 66
TIO-IKIM
pathopatch

PathoPatch - Accelerating Artificial Intelligence Based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline

996 11 8
haranrk
digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

762 75 28
RamonKaspar
wsistream

Modular online patch streaming from whole-slide images for training pathology foundation models. No pre-extraction, no disk overhead – patches are sampled, filtered, and augmented on-the-fly.

697 0 0
DIAGNijmegen
wholeslidedata

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

567 114 31
tand826
wsiprocess

Whole Slide Image (WSI) Processing Library

410 25 3
HautaniemiLab
histolytics

Interpretable Analysis of Histological WSIs

379 17 0
rmuraix
histoslice

Preprocessing module for large histological images

296 0 0
andreped
vsi2tif

A package for converting images from cellSens VSI format to tiled, pyramidal TIFF

100 26 5
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