Wsi Python Packages

histolab

Library for Digital Pathology Image Processing

pathopatch

PathoPatch - Accelerating Artificial Intelligence Based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

wsistream

Modular online patch streaming from whole-slide images for training pathology foundation models. No pre-extraction, no disk overhead – patches are sampled, filtered, and augmented on-the-fly.

wholeslidedata

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

wsiprocess

Whole Slide Image (WSI) Processing Library

histolytics

Interpretable Analysis of Histological WSIs

histoslice

Preprocessing module for large histological images

vsi2tif

A package for converting images from cellSens VSI format to tiled, pyramidal TIFF