Workflow Tool Python Packages

bam-readgroup-to-json

convert each readgroup id to a json file from a BAM

merge-sqlite

merge arbitrary number of sqlite files

readgroup-json-db

read readgroup data as json and store in sqlitedb

picard-metrics-sqlite

store picard metrics in sqlite

highway

Python SDK for Highway Workflow Engine

fastqc-db

store FastQC data/summary in sqlitedb

fastqc-sqlite

store FastQC data/summary in sqlitedb

samtools-metrics-sqlite

store samtools metrics in sqlite

taskcontrol

Workflow Automation Library with support for Concurrent or Event based processes or activities in Local or Network Automation Tasks, including CI CD activities

fastqc-to-json

fastqc to json for bwa cwl