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Whole Slide Image Python Packages

Python packages with the GitHub topic whole-slide-image. Sorted by relevance, with stars and monthly downloads.
imi-bigpicture
wsidicom

Python package for reading DICOM WSI file sets.

94K 49 10
imi-bigpicture
opentile

Python library for reading tiles from wsi tiff-files.

6K 16 5
Franblueee
torchmil

Deep Multiple Instance Learning library for Pytorch

973 82 6
DIAGNijmegen
wholeslidedata

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

567 114 31
okunator
cellseg-gsontools

Toolbelt for merging and extracting features from geojson masks.

458 19 0
rmuraix
histoslice

Preprocessing module for large histological images

296 0 0
RhDm
dogsled

Macenko medical slide normalisation

290 4 0
jgamper
compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

170 55 1
AtlasAnalyticsLab
moozy

A patient-first foundation model for computational pathology. Two-stage training (self-supervised slide encoding + supervised case-level alignment) on 77K+ public whole-slide images across 333 clinical tasks.

116 15 0
mahmoodlab
trident-test

A package for preprocessing whole-slide images.

67 553 118
agentdr1
tmil

Transformer based Multiple Instance Learning

35 24 0
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