PyRank

Whole Genome Sequencing Python Packages

Python packages with the GitHub topic whole-genome-sequencing. Sorted by relevance, with stars and monthly downloads.
BesenbacherLab
cfdnalab

Ultra-fast command line tools for extracting bias-corrected fragmentation patterns from cell-free DNA

764 5 0
BesenbacherLab
lionheart

LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.

658 11 3
KalinNonchev
gnomad-db

Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

536 53 12
DoubleHelixApp
doublehelix

Genomic data manipulation tool

455 6 1
frichter
ore

Associate outliers with rare variation

455 2 0
ShujiaHuang
ilus

ilus: A handy tools for generating WGS/WES analysis pipeline.

370 145 36
KCCG
mitywgs

A sensitive Mitochondrial variant detection pipeline from WGS data

358 44 6
p69180
handygenome

An interacitve python interface for inspection of somatic mutations

352 1 0
pablo-aja-macaya
arvia

ARVIA: Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa

266 1 0
USDA-VS
vsnpdev

vSNP -- validate SNPs

204 23 12