Wdl Python Packages | PyRank

miniwdl

Workflow Description Language developer tools & local runner

46K 202 65

pytest-workflow

Configure workflow/pipeline tests using yaml files.

44K 70 10

toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

18K 936 246

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

7K 72 28

wdl-aid

Automatic Input Documentation for WDL workflows

6K 12 3

janis-pipelines

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

3K 44 12

wdl-lsp

Rich IDE support for Workflow Description Language

677 42 9

cromshell

Command Line Interface (CLI) for Cromwell servers

585 54 15

wdldoc

Create WDL documentation using Markdown.

309 29 5

sprocket-bio

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

221 175 65

cromtool

Development tool for Cromwell

191 1K 382

methseq

Automation tool for high-throughput sequencing DNA methylation data

149 0 0

toil-msk

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

130 934 246

cromshell-draft-release

Command Line Interface (CLI) for Cromwell servers

127 54 15

wdl2cwl

[Experimental] Workflow Definition Language (WDL) to CWL

122 28 4

toil-cwl-runner

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

117 936 246

sprocket-py

Python bindings for sprocket, a bioinformatics toolkit for Workflow Description Language (WDL).

102 175 65

wdl-viewer

A web-based visualization tool to view (inter and inner) dependencies of WDL workflows.

82 2 0