Wdl Workflow Python Packages

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

wdldoc

Create WDL documentation using Markdown.

wdl2cwl

[Experimental] Workflow Definition Language (WDL) to CWL

sprocket-py

Python bindings for sprocket, a bioinformatics toolkit for Workflow Description Language (WDL).