Viruses Python Packages

pycapsid

A set of computational tools written in python for the analysis of viral capsids

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

viralquest

A bioinformatics tool for viral genome analysis and characterization.

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomic contigs

scampiman

A pipeline to align, quality control, and summarize tiled amplicon coverage (of a virus, probably) from sequencing reads.

vargram

A Python visualization tool for genomic surveillance

pathogentrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data

hiscan

Scanning histone mimics in secquences

viralrecall

Detection of NCLDV signatures in 'omic data

reneo

Unraveling Viral Genomes from Metagenomes