Viruses Python Packages

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

pycapsid

A set of computational tools written in python for the analysis of viral capsids

scampiman

pipeline to align and summarize tiled amplicon coverage from raw sequences

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

viralquest

A bioinformatics tool for viral genome analysis and characterization.

vargram

A Python visualization tool for genomic surveillance

pathogentrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

hiscan

Scanning histone mimics in secquences

viralrecall

Detection of NCLDV signatures in 'omic data

reneo

Unraveling Viral Genomes from Metagenomes