Viruses Python Packages

viralquest

A user-friendly pipeline for viral diversity analysis and characterization.

pycapsid

Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

scampiman

pipeline to align and summarize tiled amplicon coverage from raw sequences

vargram

A Python visualization tool for genomic surveillance

pathogentrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

hiscan

Scanning histone mimics in secquences

viralrecall

Detection of NCLDV signatures in 'omic data

reneo

🦠🧬 Unraveling Viral Genomes from Metagenomes