Vcf Files Python Packages

vobject

A full-featured Python package for parsing and creating iCalendar and vCard files

snpio

SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.

vcfstats

Powerful statistics for VCF files

svforge

Synthetic VCF generator for structural variants (Manta, DELLY) with controlled variability and realistic artefact injection

haplodynamics

A python library to develop genomic data simulators

vcfy

VCF file synthesiser with random variants

tbvcfreport

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)