Variants Python Packages

gofeatureflag-python-provider

GO Feature Flag is a simple, complete and lightweight self-hosted cloud native feature flag solution 100% Open Source — built on OpenFeature 🎛️

pvactools

A cancer immunotherapy tools suite

clinvar-this

ClinVar Submission API Made Easy

mutalyzer-algebra

A Boolean Algebra for Genetic Variants

granite-suite

A collection of software to work with genomic variants

pytest-variant

Variant management within Pytest

mitoviz

Python package to plot variants on the human mitochondrial genome.

ga4gh

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

py-everything

A python package containing all the basic functions and classes for python. From simple addition to advanced file encryption.

charger

Characterization of Germline variants

cmdbtools

Command line tools for CMDB varaints browser

pepper-polish

PEPPER-Margin-DeepVariant

hifisr

HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).

fings

Filters for Next Generation Sequencing

python-outbreak-info

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

ensembl-variant-lookup

Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.

gdbigtools

GDBIGtools: A command line tools for GDBIG varaints browser

proteofav

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

ga4gh-server

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24