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Variant Effect Prediction Python Packages

Python packages with the GitHub topic variant-effect-prediction. Sorted by relevance, with stars and monthly downloads.
gagneurlab
mmsplice

Predict splicing variant effect from VCF

591 43 24
dohlee
spliceai-pytorch

Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

484 15 3
dohlee
eve-pytorch

EVE - Pytorch

432 3 0
allydunham
sequence-unet

Make protein predictions with Sequence UNET and train new models

93 23 4
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