Variant Effect Prediction Python Packages

caddsv

CADD-SV – a framework to score the effect of structural variants

mmsplice

Tissue-specific variant effect predictions on splicing

eve-pytorch

Implementation of evolutionary model of variant effect (EVE), a deep generative model of evolutionary data, in PyTorch.

spliceai-pytorch

Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

sequence-unet

Fully convolutional deep learning variant effect predictor architecture