Utrecht University Python Packages

recordlinkage

A powerful and modular toolkit for record linkage and duplicate detection in Python

4.6M 1K 153

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

33K 453 121

asreview

Active learning for systematic reviews

20K 900 164

powerfit-em

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

7K 23 10

haddock3

Official repo of the modular BioExcel version of HADDOCK

2K 240 59

asreview-dory

Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.

1K 11 4

asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

1K 44 19

asreview-insights

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

1K 40 13

asreview-covid19

Extension that adds Covid-19 related datasets to ASReview

1K 30 7

asreview-datatools

Tool to preprocess datasets for ASReview

1K 36 16

asreview-wordcloud

ASReview extension to generate wordcloud from data files.

1K 17 2

asreview-visualization

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

845 40 13

asreview-statistics

Tool to preprocess datasets for ASReview

790 36 16

ricgraph-explorer

Ricgraph - Research in context graph

779 30 7

ricgraph

Ricgraph - Research in context graph

581 30 7

asreview-hyperopt

Hyper parameter optimization extension for ASReview. EXPERIMENTAL

543 8 3

deeprank-gnn

Graph Network for protein-protein interface

490 122 32