Utrecht University Python Packages

recordlinkage

A powerful and modular toolkit for record linkage and duplicate detection in Python

3.7M 1K 153

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

36K 456 121

asreview

Active learning for systematic reviews

21K 942 171

powerfit-em

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

5K 24 10

asreview-dory

Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.

2K 11 4

asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

2K 44 19

asreview-wordcloud

ASReview extension to generate wordcloud from data files.

2K 17 2

asreview-insights

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

2K 40 13

asreview-datatools

Tool to preprocess datasets for ASReview

2K 37 16

haddock3

Official repo of the modular BioExcel version of HADDOCK

2K 251 61

asreview-covid19

Extension that adds Covid-19 related datasets to ASReview

2K 30 7

asreview-visualization

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

2K 40 13

asreview-statistics

Tool to preprocess datasets for ASReview

1K 37 16

asreview-hyperopt

Hyper parameter optimization extension for ASReview. EXPERIMENTAL

1K 8 3

ricgraph

Ricgraph - Research in context graph

987 32 7

deeprank-gnn

Graph Network for protein-protein interface

404 122 32

ricgraph-explorer

Ricgraph Explorer - Exploration for Ricgraph - Research in context graph

216 32 7