Utrecht University Python Packages

recordlinkage

A powerful and modular toolkit for record linkage and duplicate detection in Python

936K 1K 153

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

77K 458 122

asreview

Active learning for systematic reviews

10K 1K 181

powerfit-em

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

5K 24 10

haddock3

Official repo of the modular BioExcel version of HADDOCK

4K 276 67

asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

652 44 19

asreview-insights

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

598 41 13

asreview-dory

Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.

580 14 4

asreview-datatools

Tool to preprocess datasets for ASReview

572 40 17

asreview-wordcloud

ASReview extension to generate wordcloud from data files.

454 17 2

asreview-covid19

Extension that adds Covid-19 related datasets to ASReview

375 30 7

ricgraph

Ricgraph - Research in context graph

332 33 7

asreview-statistics

Tool to preprocess datasets for ASReview

331 40 17

asreview-visualization

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

318 41 13

asreview-hyperopt

Hyper parameter optimization extension for ASReview. EXPERIMENTAL

218 8 3

deeprank-gnn

Graph Network for protein-protein interface

206 122 32

ricgraph-explorer

Ricgraph - Research in context graph

76 33 7