Uniprot Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

bioservices

Access to Biological Web Services from Python.

plant-genomics-mcp

Plant genomics MCP server — 50+ tools across 23 backends (Ensembl Plants, Phytozome, UniProt, AlphaFold DB, PDBe, InterPro, JASPAR, PANTHER, OrthoDB, AraGWAS, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR, …) + cross-source synthesis. stdio + Streamable-HTTP.

pefftacular

Python library for reading and writing PEFF (PSI Extended FASTA Format) files. PEFF is a superset of FASTA used in proteomics that carries rich per-entry annotations.

fastatacular

Pure-Python library for reading and writing FASTA sequence files with UniProt-style header parsing.

uniprotptmpy

Python library, API, and MCP server for the UniProt PTM controlled vocabulary

uniprot-mcp-server

Auditable UniProt MCP server with per-response SHA-256 provenance, release pinning, verification, and offline replay.

unipressed

Comprehensive Python client for the Uniprot REST API

esmecata

From taxonomic affiliations to annotated consensus proteomes using UniProt database.

peff-uniprot-fetcher

Generate annotated PEFF files from UniProt accessions, taxonomy IDs, or search queries, using pefftacular.

protgraph

ProtGraph - A Graph-Generator for Proteins

biomcp-server

🧬 BioMCP — bioinformatics MCP server: 83 tools · 43 databases · PubMed/NCBI/BLAST/PDB/UniProt/enrichment · `pip install biomcp-server` · 生信 MCP 服务器

uniprot-mcp

UniProt MCP Server - Access comprehensive protein data via Model Context Protocol. Search, retrieve, and analyze UniProt entries with full-text search, ID mapping, and rich metadata. Supports stdio & HTTP transports for Claude Desktop and custom integrations.

bioinformatics-mcp-server

MCP server for bioinformatics data — genes, proteins, PubMed, ClinVar and sequences via NCBI & UniProt (free, no API key)

pyuniprotkb

Store the bioinformatic information in a python object given a Uniprot ID

gene-map

Tool for converting between various gene ids

ggetrs

Efficient querying of biological databases

bio2bel-uniprot

UniProt Knowledge Base to BEL

freqsap

Find frequency of single amino-acid polymoprhisms.

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

unipdb-mapper

UniProt ↔ PDB residue mapper

hcv-genotypes

HCV is categories in many Genotypes as differentiating with a sequence alignment of nucleotide (genetic Material (ssRNA(+)) of HCV with host ribosome endoplasmic reticulum of hepatocyte cells. The dataset presents HCV Sub-Genotypes 1a, 1b, 1c, 2a, 2b, 2c, 3a, 3b, 4a, 5a, 6a, 6b, 6g