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Uniprot Python Packages

Python packages with the GitHub topic uniprot. Sorted by relevance, with stars and monthly downloads.
cokelaer
bioservices

Access to Biological Web Services from Python.

41K 336 70
pachterlab
gget

🧬 gget enables efficient querying of genomic reference databases

37K 1K 85
smaniches
uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

3K 2 0
AuReMe
esmecata

EsMeCaTa: Estimating Metabolic Capabilties from Taxonomy

2K 8 0
multimeric
unipressed

Comprehensive Python client for the Uniprot REST API

1K 56 7
mpc-bioinformatics
protgraph

ProtGraph - A Graph-Generator for Proteins

588 13 8
noamteyssier
ggetrs

Efficient querying of biological databases

362 44 3
josefdc
uniprot-mcp

UniProt MCP Server - Access comprehensive protein data via Model Context Protocol. Search, retrieve, and analyze UniProt entries with full-text search, ID mapping, and rich metadata. Supports stdio & HTTP transports for Claude Desktop and custom integrations.

315 2 2
kpj
gene-map

Tool for converting between various gene ids

239 5 1
RECETOX
freqsap

Find frequency of single amino-acid polymoprhisms.

223 0 0
bio2bel
bio2bel-uniprot

UniProt Knowledge Base to BEL

218 0 1
Ruibin-Liu
pyuniprotkb

A python package to retrieve bioinformatics given Uniprot IDs.

218 5 0
AiAgentKarl
bioinformatics-mcp-server

MCP server for bioinformatics data — genes, proteins, PubMed, ClinVar and sequences via NCBI & UniProt (free, no API key)

189 1 0
widdowquinn
ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

155 3 2
tacular-omics
uniprotptmpy

Python library + API + MCP for UniProt post-translational modification (PTM) controlled vocabulary.

142 0 0
HrishiDhondge
unipdb-mapper

UniProt ↔ PDB residue mapper

129 2 0
irfan112
hcv-genotypes

HCV is categories in many Genotypes as differentiating with a sequence alignment of nucleotide (genetic Material (ssRNA(+)) of HCV with host ribosome endoplasmic reticulum of hepatocyte cells. The dataset presents HCV Sub-Genotypes 1a, 1b, 1c, 2a, 2b, 2c, 3a, 3b, 4a, 5a, 6a, 6b, 6g

126 0 0
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