Uniprot Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

bioservices

Access to Biological Web Services from Python.

uniprot-mcp-server

Auditable UniProt MCP server with per-response SHA-256 provenance, release pinning, verification, and offline replay.

unipressed

Comprehensive Python client for the Uniprot REST API

esmecata

From taxonomic affiliations to annotated consensus proteomes using UniProt database.

plant-genomics-mcp

Plant genomics MCP server — 32 tools across 11 backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR) + cross-source synthesis. stdio + Streamable-HTTP transports.

protgraph

ProtGraph - A Graph-Generator for Proteins

gene-map

Tool for converting between various gene ids

ggetrs

Efficient querying of biological databases

uniprot-mcp

UniProt MCP Server - Access comprehensive protein data via Model Context Protocol. Search, retrieve, and analyze UniProt entries with full-text search, ID mapping, and rich metadata. Supports stdio & HTTP transports for Claude Desktop and custom integrations.

pyuniprotkb

A python package to retrieve bioinformatics given Uniprot IDs.

bioinformatics-mcp-server

MCP server for bioinformatics data — genes, proteins, PubMed, ClinVar and sequences via NCBI & UniProt (free, no API key)

bio2bel-uniprot

UniProt Knowledge Base to BEL

freqsap

Find frequency of single amino-acid polymoprhisms.

uniprotptmpy

Python library for parsing and querying the UniProt PTM controlled vocabulary list.

unipdb-mapper

UniProt ↔ PDB residue mapper

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

hcv-genotypes

hcv genotypes Dataset