Uniprot Python Packages

bioservices

Access to Biological Web Services from Python.

gget

🧬 gget enables efficient querying of genomic reference databases

uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

esmecata

EsMeCaTa: Estimating Metabolic Capabilties from Taxonomy

unipressed

Comprehensive Python client for the Uniprot REST API

protgraph

ProtGraph - A Graph-Generator for Proteins

ggetrs

Efficient querying of biological databases

uniprot-mcp

UniProt MCP Server - Access comprehensive protein data via Model Context Protocol. Search, retrieve, and analyze UniProt entries with full-text search, ID mapping, and rich metadata. Supports stdio & HTTP transports for Claude Desktop and custom integrations.

gene-map

Tool for converting between various gene ids

freqsap

Find frequency of single amino-acid polymoprhisms.

bio2bel-uniprot

UniProt Knowledge Base to BEL

pyuniprotkb

A python package to retrieve bioinformatics given Uniprot IDs.

bioinformatics-mcp-server

MCP server for bioinformatics data — genes, proteins, PubMed, ClinVar and sequences via NCBI & UniProt (free, no API key)

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.

uniprotptmpy

Python library + API + MCP for UniProt post-translational modification (PTM) controlled vocabulary.

unipdb-mapper

UniProt ↔ PDB residue mapper

hcv-genotypes

HCV is categories in many Genotypes as differentiating with a sequence alignment of nucleotide (genetic Material (ssRNA(+)) of HCV with host ribosome endoplasmic reticulum of hepatocyte cells. The dataset presents HCV Sub-Genotypes 1a, 1b, 1c, 2a, 2b, 2c, 3a, 3b, 4a, 5a, 6a, 6b, 6g