Um1da058230 Python Packages

dcicutils

various util modules shared amongst several projects in our organization

dcicsnovault

The SnoVault general purpose hybrid object-relational database

smaht-submitr

Support for uploading file submissions to SMAHT.

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

encoded-core

Repository for data models common to Park Lab ENCODE style projects

tibanna-ff

This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.

magma-suite

A collection of tools to manage meta-workflows automation

qc-parser

Parses outputs of different QC tools and unifies them for the SMaHT portal

granite-suite

A collection of software to work with genomic variants

o2-processing-utils

Tool for running and logging a couple of bioinformatics tools on O2 (HMS' HPC).