U01ca200059 Python Packages

dcicutils

various util modules shared amongst several projects in our organization

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

tibanna-ff

This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.

submit4dn

Developing tools for data submission, curation and control

pypairix

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates