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Tumor Python Packages

Python packages with the GitHub topic tumor. Sorted by monthly downloads, with stars and forks.
ENHANCE-PET
lionz

LION: Lesion Segmentation. Simplified.

2K 31 6
IOBR
iobrpy

A Python toolkit for bulk RNA-seq analysis of the tumor microenvironment and immunity, transforming raw sequencing data into comprehensive microenvironment insights.

217 24 0
BroadInstitute
celligner

tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

192 15 10
Neurazum-AI-Department
vbai

A PyTorch-based deep learning library for multi-task brain MRI analysis. Train models for simultaneous dementia classification and brain tumor detection with just a few lines of code.

134 2 1
qbicsoftware
mtbparser

A simple module for diagnostic variant information parsing

100 0 0
SML-CompBio
oncomark

A deep learning tool designed to predict Cancer Hallmark activities from tumor biopsy samples.

84 3 0
AnnyaB
pfd-gste

My dissertation research project proposing novel Hybrid CNN–Transformer A/B models and scalable guidance modules for investigating shortcut-learning mitigation in brain tumour MRI classification when pixel-level masks are unavailable.

59 2 0
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