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Tumor Microenvironment Python Packages

Python packages with the GitHub topic tumor-microenvironment. Sorted by monthly downloads, with stars and forks.
LCGaoZzz
iobrx

Bit-exact, multithreaded Python+Rust acceleration layer for IOBRpy — CIBERSORT, signature scoring, TPM, EPIC, quanTIseq, MCP-counter, ESTIMATE at 23–26× speed with bit-identical outputs

611 1 0
nadeemlab
spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

589 23 2
jianhuupenn
teslaforst

Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA

250 69 13
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

70 23 2
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    • Sources & methodology