Tuberculosis Python Packages

spoligotyper

In silico spoligotyping of Mycobacterium tuberculosis complex genomes (M. bovis, M. tuberculosis, ...) from reads or assemblies

dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

crisprbuilder-tb

Python package of bio-informatics collecting and annotating Mycobacterium tuberculosis WGS data for CRISPR investigations.

vsnpdev

vSNP -- validate SNPs

tbvcfreport

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)