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Tuberculosis Python Packages

Python packages with the GitHub topic tuberculosis. Sorted by relevance, with stars and monthly downloads.
mmdebrahimi
dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

3K 0 0
stephane-robin
crisprbuilder-tb

Python package of bio-informatics collecting and annotating Mycobacterium tuberculosis WGS data for CRISPR investigations.

365 0 0
USDA-VS
vsnpdev

vSNP -- validate SNPs

204 23 12
COMBAT-TB
tbvcfreport

Parses SnpEff generated VCF and generates an HTML report.

108 3 2
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