Transcription Factor Binding Python Packages

tf-bind-transformer

A repository with exploration into using transformers to predict DNA ↔ transcription factor binding

moca

:m: Tool for motif conservation analysis

motevowrapper

Simple Python parser for MotEvo.

maxatac

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

pytfmpval

Python bindings for the TFM-Pvalue program.

bpnet-pytorch

Implementation of BPNet, a base-resolution convolutional neural network for transcription-factor binding prediction, in PyTorch.