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Trajectory Inference Python Packages

Python packages with the GitHub topic trajectory-inference. Sorted by relevance, with stars and monthly downloads.
ShobiStassen
pyvia

trajectory inference

2K 109 23
jaydu1
pyvitae

Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

1K 33 8
xinglab-ai
genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

525 19 5
aron0093
cytopath

Simulation based inference of differentiation trajectories from RNA velocity fields.

301 10 4
CostaLab
phlowerpy

hodge decomposition trajectory

129 25 2
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