Trajectory Analysis Python Packages

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

evo

Python package for the evaluation of odometry and SLAM

movingpandas

MovingPandas - a Python library for movement data exploration and analysis

znh5md

ZnH5MD - High Performance Interface for H5MD Trajectories

pyztraj

High-performance molecular dynamics trajectory analysis library in Zig

mdanalysistests

MDAnalysis is a Python library to analyze molecular dynamics simulations.

pymolar

Repository for molar crate and its dependencies

traj-dist-rs

High-performance trajectory distance & similarity measures in Rust with Python bindings

trajectopy

Trajectopy - Trajectory Evaluation in Python

mdacli

Command line interface for MDAnalysis

scdef

Deep exponential families for single-cell data.

membrane-curvature

MDAnalysis tool to calculate membrane curvature.

pytraj

Python interface of cpptraj

yupi

Python package designed for collecting and processing trajectory data.

pytrack-lib

a Map-Matching-based Python Toolbox for Vehicle Trajectory Reconstruction

traja

Python tools for spatial trajectory and time-series data analysis

pymove

PyMove is a Python library to simplify queries and visualization of trajectories and other spatial-temporal data

amep

Python data analysis package for active and soft matter simulations

ptrail

PTRAIL: A Mobility-data Preprocessing Library using parallel computation.

pystilt

Python implementation of the STILT model

trajpy

Trajpy - empowering feature engineering for trajectory analysis across domains.

ccsf

Leveraging cell-cell similarity from gene expression data for high-performance spatial and temporal cellular mappings.

pactus

Framework to evaluate Trajectory Classification Algorithms

mda

Analysis Tools for MD Simulations