Trajectory Analysis Python Packages

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

evo

Python package for the evaluation of odometry and SLAM

fastmob

High-performance mobility analysis for Python — Rust-accelerated trajectory processing, staypoint/trip/tour detection, and mobility measures, with a backend-agnostic pandas/Polars API via Narwhals.

movingpandas

MovingPandas - a Python library for movement data exploration and analysis

mdanalysistests

MDAnalysis is a Python library to analyze molecular dynamics simulations.

pystilt

Python interfaces and workflows for the STILT atmospheric dispersion model.

znh5md

ZnH5MD - High Performance Interface for H5MD Trajectories

fastmob-vis

High-performance mobility analysis for Python — Rust-accelerated trajectory processing, staypoint/trip/tour detection, and mobility measures, with a backend-agnostic pandas/Polars API via Narwhals.

pymolar

Repository for molar crate and its dependencies

trajectopy

Trajectopy - Trajectory Evaluation in Python

mdacli

Command line interface for MDAnalysis

pyztraj

High-performance molecular dynamics trajectory analysis library in Zig

pydseamslib

Python bindings to seams-core

traj-dist-rs

trajectory similarity high performance solution in rust with python binding

pytraj

Python interface of cpptraj

scdef

Deep exponential families for single-cell data.

yupi

Python package designed for collecting and processing trajectory data.

pymove

PyMove is a Python library to simplify queries and visualization of trajectories and other spatial-temporal data

pytrack-lib

a Map-Matching-based Python Toolbox for Vehicle Trajectory Reconstruction

traja

Python tools for spatial trajectory and time-series data analysis

whatitdid

See what an AI agent actually did, not just its score. Labels every step of a CLI agent's run and compares two rounds against the noise a re-run produces anyway.

amep

Python data analysis package for active and soft matter simulations

membrane-curvature

MDAnalysis tool to calculate membrane curvature.

pyfgsea

Fast preranked GSEA and rolling-window trajectory enrichment with a Rust core.