Tractography Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

gradlint

Fast gradient-scheme QC, b-vector flip detection, and repair for diffusion MRI and tractography pipelines.

pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

time-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

unravel-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

unveil-python

A simple tractography viewer implemented in python.

neuropredict

Easy and comprehensive assessment of predictive power, with support for neuroimaging features

pipetography

Nipype and tractography!

trampolino

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

tide-pipeline

TIDE is a SimNIBS-based research pipeline for tractography-informed estimation of individualised TMS intensity using motor-threshold calibration and the activating function.

pydesigner-dwi

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

utracto

Package facilitating the tracking of sub-cortical U-Fibers