Tractography Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

gradlint

Fast gradient-scheme QC, b-vector flip detection, and repair for diffusion MRI and tractography pipelines.

pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

time-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

unveil-python

Implementation of UNVEIL

unravel-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

neuropredict

easy and standardized predictive analysis for biomarkers, neuroimaging, and beyond

pipetography

Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3

trampolino

A meta-pipeline tool for tractography based on Nipype.

pydesigner-dwi

Python Port of NYU's Designer pipeline for dMRI processing

utracto

Package facilitating the tracking of sub-cortical U-Fibers