Toxicology Python Packages

chembl-downloader

Write reproducible code for getting and processing ChEMBL

scigantic-pubchem

A PubChemPy-inspired PUG REST client with throttle-aware retry, caching, BioAssay/gene/protein/Tox21 data, live cross-references into ChEMBL, BindingDB and the PDB, and a local parquet mirror for bulk CID lookups.

pybmds

U.S EPA Benchmark Dose Modeling Software (BMDS)

scigantic-comptox

Query EPA's CompTox Chemicals Dashboard: ToxCast bioactivity from a public S3 mirror, plus live Chemical/Hazard/Exposure lookups via EPA's CCTE API.

hawc-client

Health Assessment Workspace Collaborative, a content management system for systematic reviews

refua-preclinical

Preclinical operations toolkit for GLP tox and pharmacology planning, in vivo scheduling, and bioanalysis workflows.

commongroups

Molecular structure-based classification of chemicals in known hazard groups

toxic-detection

Intelligent AI Agent for Real-time Content Moderation 97.5% accuracy | Multi-stage ML pipeline | Production-ready Zero-tier filtering + Embeddings + Fine-tuned BERT + RAG

bmds-ui

U.S. EPA Benchmark Dose Modeling Software User Interface (BMDS Desktop and BMDS Online)