Topology Python Packages

topojson

Encode spatial data as topology in Python! 🌍 https://mattijn.github.io/topojson

ripser

A Lean Persistent Homology Library for Python

persim

Distances and representations of persistence diagrams

spaghetti

SPAtial GrapHs: nETworks, Topology, & Inference

gudhi

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

pytopojson

An extension of GeoJSON that encodes topology. Based on the JavaScript project

unifi-topology

Python library for UniFi network topology discovery and SVG rendering

giotto-tda

A high-performance topological machine learning toolbox in Python

giotto-ph

High performance implementation of Vietoris-Rips persistence.

findpeaks

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

giftpy

GIFT Core: Certified mathematical identities from E8×E8 gauge theory on G2 manifolds. Verified in Lean 4

buildingregulariser

Python library for cleaning and regularising building footprints in geospatial data, aligning edges to principal directions and simplifying polygons for more accurate analysis.

giotto-tda-nightly

A high-performance topological machine learning toolbox in Python

tda

Python package for topological data analysis written in Rust. Not limited to just H0 and H1.

tadasets

Synthetic data sets apt for Topological Data Analysis

scikit-tda

Topological Data Analysis for Python🐍

sgext

Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.

pyqula

Python library to compute properties of quantum tight binding models, including topological, electronic and magnetic properties and including the effect of many-body interactions.

semanticembed

6D structural risk analysis for directed graphs: find SPOFs and cascade risks in AI-agent pipelines, microservices, and CI/CD from topology alone. Source-available, free tier, no signup. Sub-millisecond.

topogeoml

Preregistered topology-aware machine learning research toolkit: differentiable persistent homology, Hodge Laplacian message passing, and statistically defensible benchmarking on graph classification (MUTAG, PROTEINS, NCI1).

comch

A specialized computer algebra system for the study of commutativity up to coherent homotopies

tda-mapper

A simple and efficient Python implementation of Mapper algorithm for Topological Data Analysis

openwisp-network-topology

Network topology collector and visualizer. Collects network topology data from dynamic mesh routing protocols or other popular networking software like OpenVPN, allows to visualize the network graph, save daily snapshots that can be viewed in the future and more.

pymoto

Modular Python framework for topology optimization