Tomography Python Packages

pygsti

A python implementation of Gate Set Tomography

porespy

A set of tools for characterizing and analyzing 3D images of porous materials

deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

svmbir

Fast code for parallel or fan beam tomographic reconstruction

odl

Operator Discretization Library https://odl.readthedocs.io/

tokamesh

Python tools for constructing meshes and geometry matrices used in tomography problems

mbirtorch

MBIR reconstruction implemented in PyTorch

mbirjax

MBIRJAX is a Python package for Model Based Iterative Reconstruction (MBIR) of images from tomographic data.

tofu

Project for an open-source python library for synthetic diagnostics and tomography for Fusion devices

cherab-inversion

CHERAB for inversion tools

torchtomo

Differentiable 2D CT in PyTorch with parallel/fan-beam projectors, exact adjoints, filtered backprojection, learnable scan geometry, and optional CUDA acceleration.

httomolibgpu

A library of GPU-enabled data processing and reconstruction methods for tomography

discorpy

Camera calibration with sub-pixel accuracy: https://discorpy.readthedocs.io/

radontea

python library for tomographic image reconstruction

seislib

Seismic imaging at local, regional, and global scale

corrct

Physically corrected projectors for X-ray induced emission CT.

httomo

High-throughput tomography pipeline

tomobar

TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software

muograph

Muon tomography data analysis library

scigantic-cryoet

Search the CZ CryoET Data Portal from Python -- a catalog and search layer over ~370 public cryo-electron tomography datasets

tike

Repository for ptychography software

cherab-lhd

CHERAB LHD machine-dependent extension

nonogram

A nonogram/picross/griddler solver written in Python 3

dart-ohgreat

DART (Discrete Algebric Reconstruction Technique) iterative reconstruction algorithm for discrete tomography.