Tomo Python Packages

scipion-em-tomo

Base tomography Scipion plugin with data model definition

scipion-em

Base Scipion plugin defining objects and protocols for EM

scipion-em-aretomo

Plugin to use AreTomo within the Scipion framework

scipion-em-continuousflex

Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D, TomoFlow, NMMD, and DeepHEMNMA for in vitro and in situ cryo-EM/ET.

scipion-em-motioncorr

Plugin to use Motioncor program within the Scipion framework

scipion-em-emantomo

Plugin to use Eman2 tomography programs within the Scipion framework

scipion-em-imod

Plugin to use some of the Tomography tools from IMOD in Scipion

scipion-em-dynamo

Dynamo tomography plugin for Scipion

scipion-em-gctf

Plugin to use Gctf program within the Scipion framework

scipion-em-reliontomo

Plugin to use Relion tomography programs within the Scipion framework

scipion-em-cistem

Plugin to use cisTEM programs within the Scipion framework

scipion-em-sphire

Plugin to use Sphire programs within the Scipion framework

scipion-em-warp

Plugin to use Warp programs within the Scipion framework

scipion-em-novactf

Plugin to use NovaCTF in scipion

scipion-em-tomotwin

Plugin to use TomoTwin within the Scipion framework

scipion-em-tomosegmemtv

Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)

scipion-em-tomo3d

Plugin for the software of Jose Jesus Fernandez

scipion-em-pyseg

Plugin to use PySeg programs within the Scipion framework

scipion-em-membrain

Plugin to run MemBrain software within Scipion

scipion-em-cryocare

Plugin to integrate cryoCARE: denoiser for tomography

scipion-em-tomoviz

Tools for 3D visualization and manipulation of tomography data

scipion-em-deepfinder

Scipion plugin for deepfinder (tomography picker)

scipion-em-fidder

Plugin to use fidder within the Scipion framework

scipion-em-appion

Plugin to use Warp programs within the Scipion framework