Terminology Python Packages

pathling

Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.

21K 129 23

bio2bel-hgnc

Hugo Gene Nomenclature Consortium (HGNC) to BEL

1K 2 0

bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

792 0 0

bio2bel-chebi

A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL

716 1 0

medialpy

A small python package that allows the user to look up common medical abbreviations.

708 13 2

jate

JATE - Just Automatic Term Extraction (in Python)

344 85 28

bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

308 10 5

bio2bel-uniprot

UniProt Knowledge Base to BEL

267 0 1

bio2bel-go

A Bio2BEL package for converting the Gene Ontology (GO) to BEL

178 1 0

bio2bel-mesh

A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)

178 4 1

bio2bel-famplex

Convert FamPlex to BEL

169 0 0

bio2bel-pfam

A Bio2BEL package for PFAM (https://pfam.xfam.org/)

152 0 0