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Taxonomic Profiling Python Packages

Python packages with the GitHub topic taxonomic-profiling. Sorted by relevance, with stars and monthly downloads.
sourmash-bio
sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

11K 542 92
metagenopolis
meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

3K 39 2
taxprofiler
taxpasta

TAXnomic Profile Aggregation and STAndardisation

574 44 8
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