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Taxonomic Profiling Python Packages

Python packages with the GitHub topic taxonomic-profiling. Sorted by monthly downloads, with stars and forks.
sourmash-bio
sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

16K 556 94
metagenopolis
meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

721 43 3
taxprofiler
taxpasta

TAXnomic Profile Aggregation and STAndardisation

340 43 8
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology