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Taxonomic Classifications Python Packages

Python packages with the GitHub topic taxonomic-classifications. Sorted by relevance, with stars and monthly downloads.
taxprofiler
taxpasta

TAXnomic Profile Aggregation and STAndardisation

366 44 8
pnnl
pnnl-atlas

ATLAS - Three commands to start analyzing your metagenome data

268 406 97
metagenome-atlas
metagenome-atlas

ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

178 406 97
FOI-Bioinformatics
flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

135 68 8
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