Synthetic Biology Python Packages

dnachisel

:pencil2: A versatile DNA sequence optimizer

64K 272 51

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

34K 689 105

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

18K 31 8

sequenticon

:space_invader: Generate identicons for DNA sequences with Python

6K 38 5

codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

5K 211 31

ostir

Open Source Transcription Initiation Rates

2K 33 9

dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

1K 66 10

deepbgc

BGC Detection and Classification Using Deep Learning

1K 158 29

symbac

A package for generating synthetic images of bacteria in phase contrast or fluorescence. Used for creating training data for machine learning segmentation and tracking algorithms.

916 22 11

ypkpathway

Automatic pathway assembly with the YeastPathwayKit

862 2 1

dna-features-viewer-lite

Plot features from DNA sequences (e.g. Genbank) with Python

688 689 105

geneblocks

:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

642 44 3

dasi

A Python molecular biology CAD tool with a dead-simple user interface

618 13 1

teemi

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!

546 44 3

bandwitch

Enzyme selection for DNA verification and identification.

521 15 0

bandwagon

Simulate DNA band patterns for gel migration experiments.

510 20 3

plateo

Read/write microplate and picklist data for lab automation

505 46 8

dnadesign

Python bindings for dnadesign

481 38 1

dnaweaver

Make ordering and assembly plans for DNA sequences

475 37 9

retropath2-wrapper

'python wrapper to run retropath2.0 knime workflow'

417 9 1

caravagene

Plot multi-part genetic constructs.

376 26 2

tatapov

:paw_prints: DNA overhang misannealing data for Python

372 13 1

crazydoc

Read DNA sequences from colourful Microsoft Word documents

368 34 4

genedom

Batch domestication of genetic parts with Python

346 16 1