Synthetic Biology Python Packages

dnachisel

:pencil2: A versatile DNA sequence optimizer

120K 274 52

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

64K 692 105

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

23K 31 8

strider-dna

A Python library for nucleic acid thermodynamics, kinetics, and DNA/RNA circuit design with end-to-end simulation pipelines.

6K 3 1

codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

6K 215 31

factorforge-cds

Open-source CDS design and pre-synthesis sequence review for plant gene constructs.

6K 4 1

sequenticon

:space_invader: Generate identicons for DNA sequences with Python

6K 38 5

gen

Git for genomes

3K 32 0

dnacauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

2K 66 10

deepbgc

BGC Detection and Classification Using Deep Learning

1K 158 29

ostir

Software for predicting translation initiation rates in bacteria

1K 33 9

geneblocks

:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

808 46 3

plateo

🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more

693 46 8

dnaweaver

Make ordering and assembly plans for DNA sequences

681 37 9

ypkpathway

Simulation and documentation of metabolic pathway assemblies using the Yeast Pathway Kit.

671 2 1

symbac

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

620 23 11

bandwagon

🎺 Plot DNA digestion band patterns with Python

585 20 3

bandwitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

581 15 0

dasi

A Python molecular biology CAD tool with a dead-simple user interface

580 13 1

tatapov

Tools for DNA overhang misannealing data.

571 13 1

dnadesign

Python bindings for dnadesign

532 38 1

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

531 692 105

teemi

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!

497 44 3

genedom

Batch domestication of genetic parts with Python

475 16 1