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Synteny Python Packages

Python packages with the GitHub topic synteny. Sorted by relevance, with stars and monthly downloads.
moshi4
pygenomeviz

A genome visualization python package for comparative genomics

5K 403 25
tanghaibao
jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

2K 909 199
Genome-structure-evolution-analysis
akrup

Ancestral Karyotype Reconstruction Universal Pipeline

756 4 1
vestalisvirginis
synphage

Pipeline to create phage genome synteny graphics from genbank files

532 16 0
pentamorfico
hoodini-colab

Google Colab notebook for running Hoodini gene neighborhood analysis with a nice GUI

413 4 1
erinyoung
daisyblast

A Python tool to find, plot, and export synteny blocks from all-vs-all BLAST.

310 2 0
lpryszcz
pyscaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

134 24 11
DeadlineWasYesterday
phyca

phylogeny and collinearity aware assembly evaluation toolkit.

122 1 0
UdeM-LBIT
superrec2

Run and compare algorithms for phylogenetic reconciliation and super-reconciliation

63 4 1
robaina
pynteny

Query sequence database by HMMs arranged in predefined synteny structure

4 14 1
    • Data from PyPI, GitHub, ClickHouse, and BigQuery