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Structural Variation Python Packages

Python packages with the GitHub topic structural-variation. Sorted by relevance, with stars and monthly downloads.
ACEnglish
truvari

Structural variant toolkit for VCFs

5K 418 61
kcleal
dysgu

Toolkit for calling structural variants using short or long reads

4K 115 14
fritzsedlazeck
sniffles

Structural variation caller using third generation sequencing

2K 670 102
sbslee
pypgx

A Python package for pharmacogenomics (PGx) research

2K 91 20
murphycj
agfusion

Python package to annotate and visualize gene fusions.

1K 67 27
bcgsc
mavis

Merging, Annotation, Validation, and Illustration of Structural variants

1K 76 15
tjiangHIT
cutesv

Long read based human genomic structural variation detection with cuteSV

814 290 38
iprada
circle-map

Circular DNA analysis tools

792 67 20
XiaoTaoWang
neoloop

Predict neo-loops induced by structural variations

550 76 18
ylab-hi
chimeralm

A language model enables accurate structural variant detection in whole-genome amplified long-read sequencing

450 3 0
hall-lab
svtools

Tools for processing and analyzing structural variants.

402 157 56
dantaki
sv2

SV2: Support Vector Structural Variation Genotyper

255 59 9
bio-ontology-research-group
deepsvp

DeepSVP: Integration of Genomics and Phenotypes forStructural Variant Prioritization using Deep Learning

137 18 4
rhshah
icallsv

The module helps to call structural variants using NGS data set on human.

131 22 10
MNMdiagnostics
dbfe

Distribution-based feature extraction

112 6 2
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