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Structural Variation Python Packages

Python packages with the GitHub topic structural-variation. Sorted by relevance, with stars and monthly downloads.
kcleal
dysgu

Toolkit for calling structural variants using short or long reads

5K 115 14
ACEnglish
truvari

Structural variant toolkit for VCFs

4K 410 60
fritzsedlazeck
sniffles

Structural variation caller using third generation sequencing

2K 654 101
murphycj
agfusion

Python package to annotate and visualize gene fusions.

1K 67 27
sbslee
pypgx

A Python package for pharmacogenomics (PGx) research

1K 88 19
iprada
circle-map

Circular DNA analysis tools

1K 66 20
bcgsc
mavis

Merging, Annotation, Validation, and Illustration of Structural variants

1K 76 14
tjiangHIT
cutesv

Long read based human genomic structural variation detection with cuteSV

772 287 38
XiaoTaoWang
neoloop

Predict neo-loops induced by structural variations

532 76 18
hall-lab
svtools

Tools for processing and analyzing structural variants.

485 157 56
ylab-hi
chimeralm

A language model enables accurate structural variant detection in whole-genome amplified long-read sequencing

381 3 0
dantaki
sv2

Support Vector Structural Variation Genotyper

222 59 9
bio-ontology-research-group
deepsvp

DeepSVP: Integration of Genomics and Phenotypes forStructural Variant Prioritization using Deep Learning

145 18 4
MNMdiagnostics
dbfe

DBFE is a Python library with feature extraction methods that facilitate classifier learning from distributions of genomic variants.

99 6 2
rhshah
icallsv

A Framework to call Structural Variants from NGS based datasets

96 22 10
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