Stochastic Simulation Python Packages

sde-sim-rs

Powerful and flexible stochastic differential equation (quasi) Monte-Carlo simulation library written in Rust with Python bindings

mantis-delta

Mass-Action Network Theory, Inference, and Stability — structural and numerical analysis of chemical reaction networks

crn-jax

Chemical reaction networks in JAX: GPU-parallel stochastic simulations.

uc-sgsim

An uncondition random field generation tools that are easy to use

pinetree

🌲 a flexible gene expression simulator with codon-specific translation rates

pyrbm

A Python framework to build and simulate stochastic rules-based models

interaction-inference

Inference of interaction between genes using constrained optimization