Stochastic Simulation Algorithm Python Packages

stochastic

Generate realizations of stochastic processes in python.

bioscrape

Bioscrape: Biological Modeling, Simulation, and Parameter Estimation

biosimulators-gillespy2

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

stochpy

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

biosimulators-bionetgen

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

abstochkin

Agent-based Stochastic Kinetics

mumot

Multiscale Modelling Tool - mathematical modelling without the maths

pyrbm

A Python framework to build and simulate stochastic rules-based models.

dynsis

Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.