Stochastic Simulation Algorithm Python Packages

stochastic

Generate realizations of stochastic processes in python.

stochpy

StochPy (Stochastic modeling in Python) provides several stochastic simulation algorithms to simulate (bio)chemical systems of reactions in a stochastic manner.

biosimulators-gillespy2

BioSimulators-compliant command-line interface to the GillesPy2 simulation program.

biosimulators-bionetgen

BioSimulators-compliant command-line interface to the BioNetGen simulation program <https://bionetgen.org>.

abstochkin

Agent-based Stochastic Kinetics

bioscrape

Biological Stochastic Simulation of Single Cell Reactions and Parameter Estimation

mumot

Multiscale Modelling Tool - mathematical modelling without the maths

dynsis

Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.

pyrbm

A Python framework to build and simulate stochastic rules-based models.