Statistical Analysis Python Packages

pymc

Bayesian Modeling and Probabilistic Programming in Python

prospector

Inspects Python source files and provides information about type and location of classes, methods etc

pymc3

Bayesian Modeling and Probabilistic Programming in Python

scikit-posthocs

Multiple Pairwise Comparisons (Post Hoc) Tests in Python

bambi

BAyesian Model-Building Interface (Bambi) in Python.

autofit

PyAutoFit: Classy Probabilistic Programming

mlr

Multiple linear regression with statistical inference, residual analysis, direct CSV loading, and other features

calibrax

JAX benchmarking, profiling and evaluation metrics for Flax NNX: a registry of pure-function metrics (regression, classification, calibration, uncertainty, forecasting, generative, image, text, audio, graph, fairness), XLA FLOP counting, roofline analysis, GPU and energy monitoring, regression detection, publication exports, W&B and MLflow.

stata-mcp

Stata-MCP: A MCP server for integrating Stata into your agent loop with a safety-first design.

pycm

Multi-class confusion matrix library in Python

skyborn

Climate & Atmospheric Science Python Toolkit

pydtmc

A library for discrete-time Markov chains analysis.

brisque

Blind/Referenceless Image Spatial QUality Evaluator (BRISQUE)

metbit

Metbit is an python package to analyse metabolomics

krysa

:rat: Statistical analysis for rats.

evalstats

Statistical inference for AI evaluations, from model comparisons to corrections for LLM judge bias, optimized for small sample sizes. All defaults battle-tested in Monte Carlo simulations.

codeentropy

Python package for calculating configurational entropy from molecular dynamics simulations using the multiscale cell correlation method.

infomeasure

Python package for calculating various information measures, including entropy, mutual information, transfer entropy, and more, with support for both discrete and continuous variables.

gibbus

Flexible analytic log-concave distributions fitted by maximum likelihood, with support-aware modeling and optional mixtures for multimodal data.

sccoda

A Bayesian model for compositional single-cell data analysis

triceratops

Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars

benchstats

Statistical testing & reporting CLI tool and Python package. Primarily for benchmark results comparison, but you can plug in any data source with ease.

kalepy

Kernel Density Estimation and (re)sampling

lacuna-quant

Open-source quantitative research validation for finding where alpha breaks.